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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:05:29 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Chorismate_mut.html
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#====================================
# Aligned_structures: 2
#   1: 1ecma.pdb
#   2: 5csma.pdb
#
# Length:        274
# Identity:       25/274 (  9.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     25/274 (  9.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          112/274 ( 40.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ecma.pdb               1  N----------PLLALREKISALDEKLLALLAERRELAVEVG-KAKLLSH---------R   40
5csma.pdb               1  -MDFTKPETVLNLQNIRDELVRMEDSIIFKFIERSHF----ATCPSVYEANHPGLEIPNF   55
                                       L   R               ER                          

1ecma.pdb              41  PVRDIDRERDLLERLITLGKAHHLD-----------------------------------   65
5csma.pdb              56  KG---SFLDWALSNLEIAHSRIRRFESPDETPFFPDKIQKSFLPSINYPQILAPYAPEVN  112
                                      L  L                                             

1ecma.pdb              66  -AHY-ITRLFQLIIEDSVLTQQALLQQHP------LLALREKISALDEKLLALLAERREL  117
5csma.pdb             113  YNDKIKKVYIEKIIPLI------------SKRDGDDKNNFGSVATRDIECLQSLSRRIHF  160
                                       II                                D   L  L  R   

1ecma.pdb             118  AVEVGKAKLLSHR------------------PVRDIDRERDLLERLITLGKAHH-----L  154
5csma.pdb             161  GKFVAEAKFQSD-IPLYTKLIKSKDVEGIMKNITNSAVEEKILERLTKKAEVYGVDPTRI  219
                              V  AK  S                           E   LERL              

1ecma.pdb             155  DAHYITRLFQ-LIIEDSVLTQQALLQQHLNKIN-  186
5csma.pdb             220  SPEYLVKIYKEIVIPITKEVEVEYLLRRLE---E  250
                              Y         I          L   L     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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