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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 19:22:53 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/CBM_20.html
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#====================================
# Aligned_structures: 8
#   1: 1cgt.pdb
#   2: 1ciu.pdb
#   3: 1cqya.pdb
#   4: 1cyg.pdb
#   5: 1d3ca.pdb
#   6: 1kum.pdb
#   7: 1pama.pdb
#   8: 1qhpa.pdb
#
# Length:        127
# Identity:       11/127 (  8.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     30/127 ( 23.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           34/127 ( 26.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cgt.pdb                1  LTG----DQVTVRFVVNNA-STTLGQNLYLTGNVAELGNWSTGST-----A-IG-PAFNQ   48
1ciu.pdb                1  LTG----NQICVRFVVNNA-STVYGENVYLTGNVAELGNWDTS-K-----A-IG-PMFNQ   47
1cqya.pdb               1  -------TPVMQTIVVKNV-PTTIGDTVYITGNRAELGSWDTK-Q-----YPIQ-LY-YD   44
1cyg.pdb                1  LTN----DQVSVRFVVNNA-TTNLGQNIYIVGNVYELGNWDTS-K-----A-IG-PMFNQ   47
1d3ca.pdb               1  --G----DQVSVRFVVNNA-TTALGQNVYLTGSVSELGNWDPA-K-----A-IG-PMYNQ   45
1kum.pdb                1  ---CTTPTAVAVTFDLT-A-TTTYGENIYLVGSISQLGDWETS-------DGIA-LS-AD   46
1pama.pdb               1  -TG----DQVTVRFVINNA-TTALGQNVFLTGNVSELGNWDPN-N-----A-IG-PMYNQ   46
1qhpa.pdb               1  LSG----TQTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTD-TSGAVNNAQGPLL-AP   54
                                      v f    a  T  G   y  G   eLG W            i       

1cgt.pdb               49  VIH-QY----PTWYYDVSVPAGKQLEFKFFKKNGS-TITWESGSNHTFTTPASG---TAT   99
1ciu.pdb               48  VVY-QY----PTWYYDVSVPAGTTIQFKFIKKNGN-TITWEGGSNHTYTVPSSS---TGT   98
1cqya.pdb              45  ---SHS----NDWRGNVVLPAERNIEFKAFIKSKDGTVKSWQTIQQSWNPVPL--K-TTS   94
1cyg.pdb               48  VVY-SY----PTWYIDVSVPEGKTIEFKFIKKDSQGNVTWESGSNHVYTTPTNT---TGK   99
1d3ca.pdb              46  VVY-QY----PNWYYDVSVPAGKTIEFKFLKKQGS-TVTWEGGSNHTFTAPSSG---TAT   96
1kum.pdb               47  ----KYTSSDPLWYVTVTLPAGESFEYKFIRIESDDSVEWESDPNREYTVPQACGTSTAT  102
1pama.pdb              47  VVY-QY----PTWYYDVSVPAGQTIEFKFLKKQGS-TVTWEGGANRTFTTPTSG---TAT   97
1qhpa.pdb              55  ----NY----PDWFYVFSVPAGKTIQFKFFIKRADGTIQWENGSNHVATTPTGA---TGN  103
                                y    p W   v  Pag    fKf  k       we   n   t p      T  

1cgt.pdb              100  VTVNWQ-  105
1ciu.pdb               99  VIVNWQQ  105
1cqya.pdb              95  HTSSW--   99
1cyg.pdb              100  IIVDWQN  106
1d3ca.pdb              97  INVNWQP  103
1kum.pdb              103  VTDTWR-  108
1pama.pdb              98  VNVNWQP  104
1qhpa.pdb             104  ITVTWQN  110
                               W  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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