################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:18:58 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/CBD_3.html
################################################################################################
#====================================
# Aligned_structures: 3
#   1: 1g43a.pdb
#   2: 1nbca.pdb
#   3: 1tf4a.pdb
#
# Length:        174
# Identity:       20/174 ( 11.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     81/174 ( 46.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           42/174 ( 24.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1g43a.pdb               1  -AGTGVVSVQFNNGSSPASSNSIYARFKVTNTSG--SPINLADLKLRYYYTQDA-D---K   53
1nbca.pdb               1  -----NLKVEFYNSNPSDTTNSINPQFKVTNTGS--SAIDLSKLTLRYYYTVDG-Q---K   49
1tf4a.pdb               1  P----EIFVEAQINTPG--TTFTEIKAMIRNQSGWPARMLD-KGTFRYWFTLDEGVDPA-   52
                                   Vef n  p   tnsi   fkvtNtsg  s i l kltlRYyyT D       

1g43a.pdb              54  PLTFWCDHAGYMSG-S-NYIDATSKVTGSFKAVSPAVTNADHYLEVALNSDAGSLP----  107
1nbca.pdb              50  DQTFWCDHAAIIG-SNGSYNGITSNVKGTFVKMSSSTNNADTYLEISFT--GGTLE----  102
1tf4a.pdb              53  DITVSSAYNQ--------CATP-----EDVHHVS-GD---LYYVEIDCTG-EKIFPGGQS   94
                           d Tfwcdha         y        g f  vS      d YlEi  t   g lp    

1g43a.pdb             108  AGGSIEIQTRFARNDWSNFDQSNDWSYT-AAGSYMDWQKISAFVGGTLAYGSTP  160
1nbca.pdb             103  PGAHVQIQGRFAKNDWSNYTQSNDYSFK-SASQFVEWDQVTAYLNGVLVWGKEP  155
1tf4a.pdb              95  E-HRREVQFRIAG--GPGWDPSNDWSFQGIGNELAPAPYIVLYDDGVPVWGTAP  145
                                eiQ RfA   wsn dqSNDwSf   a     w  i ay  GvlvwG  P


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################