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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:02:43 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/CASc.html
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#====================================
# Aligned_structures: 2
#   1: 1bmq.pdb
#   2: 1cp3a.pdb
#
# Length:        274
# Identity:       63/274 ( 23.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     63/274 ( 23.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           61/274 ( 22.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bmq.pdb                1  GNVKLCSLEEAQRIWKQKSAEIYPIMDKSSR-TRLALIICNEEFD---SIPRRTGAEVDI   56
1cp3a.pdb               1  --------------------NSYKMD-YP--EMGLCIIINNKNFHKSTGMTSRSGTDVDA   37
                                                 Y           L  II N  F        R G  VD 

1bmq.pdb               57  TGMTMLLQNLGYSVDVKKNLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGK  116
1cp3a.pdb              38  ANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKED-HSKRSSFVCVLLSHGEEGIIFGT   96
                                   NL Y V  K  LT                H    S   V  SHG    I G 

1bmq.pdb              117  KHSEQVPDILQLNAIFNMLNTKNCPSLKDKPKVIIIQACRGDSPGVVWFKDAI---KKAH  173
1cp3a.pdb              97  N------GPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDC-------GIEHKIP  143
                                      L  I N      C SL  KPK  IIQACRG                K  

1bmq.pdb              174  IEKDFIAFCSSTPDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQP--  231
1cp3a.pdb             144  VDADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVAT-EF  202
                              DF    S  P   SWR    GS FI  L      YA       I   V         

1bmq.pdb              232  --------D-GRAQMPTTERVTLTRCFYLFPGH-  255
1cp3a.pdb             203  ESFSFDATFHAKKQIPCIV-SMLTKELYFY---H  232
                                        Q P      LT   Y      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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