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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:09:00 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Amidase.html
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#====================================
# Aligned_structures: 2
#   1: 1gr8a.pdb
#   2: 1m22a.pdb
#
# Length:        509
# Identity:      110/509 ( 21.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    110/509 ( 21.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          119/509 ( 23.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1gr8a.pdb               1  -----MISLADLQRRIETGELSPNAAIAQSHAAIEARE----KEVHAFVRHDKSAR----   47
1m22a.pdb               1  PFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPR-LRAVIELNPDALKEAA   59
                                    ADLQ R   GEL            I A          A       A     

1gr8a.pdb              48  ---------AQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAG   98
1m22a.pdb              60  ERDRERRDGR-LRGPLHGIPLLLKDNINAAPMATSAGSLALQGFRPD-DAYLVRRLRDAG  117
                                        GPL GI    KD I  A M T  GS    G  P  DA  V  L  AG

1gr8a.pdb              99  ATIIGKTTTTAFAS-R--DPT--------ATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA  147
1m22a.pdb             118  AVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVA  177
                           A   GKT     A  R  D           T NP    HSP GSSSGSA AV A     A

1gr8a.pdb             148  LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM  207
1m22a.pdb             178  IGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAI  237
                            GT T GS   PAA  G    KP        G    S   DT G       D A  L A 

1gr8a.pdb             208  T-----------------GRSEFSGIV--PAKAPRIGVVRQEFAGAV----EPAAEQGLQ  244
1m22a.pdb             238  AGRDDADPATATMPGRAVYD-YTARLDPQGLRGKRIGLLQT-P----LLKYR-GMPPLIE  290
                                                             RIG                       

1gr8a.pdb             245  AAIKAAERAGASVQAIDLPE---AVHEAWRIHPIIQDFEAHRALA-------------WE  288
1m22a.pdb             291  QAATELRRAGAVVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAF  350
                            A     RAGA V    LP                      R                  

1gr8a.pdb             289  FSEHHDEIAPML-----RASLDATVGLT---PKEYDEARRIGRRGRREL--GEVFE--GV  336
1m22a.pdb             351  NQAHSKQE----LGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQL  406
                              H                L             Y  AR   RR                

1gr8a.pdb             337  DVLLTYSAPGTAPAKALASTGDP----RYNRLWTLMGNPCVNVPVLKVGGLPIGVQVIAR  392
1m22a.pdb             407  DALVAPTT-GVAWPIRS------DFPGESYSAAAVAGYPSLTVPMGQIDGLPVGLLFMGT  459
                           D L      G A                        G P   VP     GLP G      

1gr8a.pdb             393  FGNDAHALATAWFLEDALAK---------  412
1m22a.pdb             460  AWSEPKLIEMAYAYEQRTR-ARRPPHFDT  487
                                     A   E              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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