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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:20:25 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/AlaDh_PNT_D2.html
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#====================================
# Aligned_structures: 2
#   1: 1f8ga.pdb
#   2: 1pjca.pdb
#
# Length:        195
# Identity:       45/195 ( 23.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     45/195 ( 23.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           48/195 ( 24.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f8ga.pdb               1  AGYRAVIDGAYEFA-------RAFPTAAG---TVPPARVLVFGVGVAGLQAIATAKRLGA   50
1pjca.pdb               1  AGRLSVQFGARFLERQQGGRGVLLG----GVPGVKPGKVVILGGGVVGTEAAKMAVGLGA   56
                           AG   V  GA                       V P  V   G GV G  A   A  LGA

1f8ga.pdb              51  VV-ATDVRAATKEQVESL-G--GKFITVDDEATAETAGGYAKEGEEFRKKQAEAVLKELV  106
1pjca.pdb              57  QVQIFDINVERLSYLETLFGSRVELLYS----------------------NSAEIETAVA   94
                            V   D         E L G                                        

1f8ga.pdb             107  KTDIAITTALIPGKPAPVLITEEVT---KKPGSVIIDLAVEAGGNCPLSEPG----KIVV  159
1pjca.pdb              95  EADLLIGAVLVPGRRAPILVPASL-VEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYE  153
                             D  I   L PG  AP L            GSVI D AV  GG      P         

1f8ga.pdb             160  KHGVKIVGHTNVPSR  174
1pjca.pdb             154  VFGVVHYGVPNMPGA  168
                             GV   G  N P  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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