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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:19:22 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Agglutinin.html
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#====================================
# Aligned_structures: 2
#   1: 1jlxa1.pdb
#   2: 1jlxa2.pdb
#
# Length:        170
# Identity:       33/170 ( 19.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     33/170 ( 19.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           41/170 ( 24.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1jlxa1.pdb              1  A-----G-LPVIMCLKSNNHQKYLRYQSDNIQQ-YGLLQFSADKILDPLAQFEVEPSKTY   53
1jlxa2.pdb              1  -WKSIFQFPKGYVTFKG-NNGKYLGVITIN---QLPCLQFGYDNLNDPKVAHQMFVTS-N   54
                                          K  N  KYL     N       LQF  D   DP            

1jlxa1.pdb             54  DGLVHIKSRYTNKYLVRWSPN--HYWITASANEPDENKSNWA-----CTLF-KPLYVEEG  105
1jlxa2.pdb             55  G-TICIKSNYMNKFWRL----STDDWILVDGNDP-R------ETNEAAALFRSDVH----   98
                                IKS Y NK            WI    N P               LF         

1jlxa1.pdb            106  NMKKVRLLHVQLGHYTQNYTVG-GSFVSYLFAESSQIDTGSKDVFHVID-  153
1jlxa2.pdb             99  DFNVISLLNMQKTWFIKRFTSGKPGFINCMNAATQNVD--ETAILEIIEL  146
                                 LL  Q        T G   F     A     D         I  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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