################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:15:19 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/A2M_B.html
################################################################################################
#====================================
# Aligned_structures: 2
#   1: 1c3d.pdb
#   2: 1qqfa.pdb
#
# Length:        294
# Identity:      231/294 ( 78.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    231/294 ( 78.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           18/294 (  6.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1c3d.pdb                1  MLDAERLKHLIVTPSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGY   60
1qqfa.pdb               1  -----------------GEQNMIGMTPTVIAVHYLDQTEQWEKFGLEKRQEALELIKKGY   43
                                            GEQNMIGMTPTVIAVHYLD TEQWEKFGLEKRQ ALELIKKGY

1c3d.pdb               61  TQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQK  120
1qqfa.pdb              44  TQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQK  103
                           TQQLAF QP SA AAF  R PSTWLTAYV  VFSLA NLIAIDSQVLCGAVKWLILEKQK

1c3d.pdb              121  PDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAG  180
1qqfa.pdb             104  PDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAG  163
                           PDGVFQED PVIHQEMIGG RN  E D  LTAFVLI LQEA DICE QVNSLPGSI KAG

1c3d.pdb              181  DFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEAT  240
1qqfa.pdb             164  EYLEASYLNLQRPYTVAIAGYALALMNKLEEPYLTKFLNTAKDRNRWEEPGQQLYNVEAT  223
                             LEA Y NLQR YTVAIAGYALA M  L  P L KFL TAKD NRWE PG QLYNVEAT

1c3d.pdb              241  SYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAP  294
1qqfa.pdb             224  SYALLALLLLKDFDSVPPVVRWLNDERYYGGGYGSTQATFMVFQALAQYRADV-  276
                           SYALLALL LKDFD VPPVVRWLN  RYYGGGYGSTQATFMVFQALAQY  D  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################