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# Program: MUSTANG v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, P. J. Stuckey, J. C. Whisstock, and A. M. Lesk
# Rundate: Wed Aug 10 15:42:06 2005
# Report_file: AMLGE.html
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#====================================
# Aligned_structures: 5
#   1: 1HHOA.pdb
#   2: 2DHBA.pdb
#   3: 1HHOB.pdb
#   4: 2DHBB.pdb
#   5: 1MBD.pdb
#
# Length:        154
# Identity:       24/154 ( 15.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     55/154 ( 35.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           15/154 (  9.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1HHOA.pdb               1  -VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFD-L-----SHGSA   53
2DHBA.pdb               1  -VLSAADKTNVKAAWSKVGGHAGEYGAEALERMFLGFPTTKTYFPHFD-L-----SHGSA   53
1HHOB.pdb               1  VHLTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNP   58
2DHBB.pdb               1  VQLSGEEKAAVLALWDKV--NEEEVGGEALGRLLVVYPWTQRFFDSFGDLSNPGAVMGNP   58
1MBD.pdb                1  -VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASE   59
                             Ls   k  V a W KV     e G eaL R     P T   F  F  L       g  

1HHOA.pdb              54  QVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHL  113
2DHBA.pdb              54  QVKAHGKKVADGLTLAVGHLDDLPGALSDLSNLHAHKLRVDPVNFKLLSHCLLSTLAVHL  113
1HHOB.pdb              59  KVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHF  118
2DHBB.pdb              59  KVKAHGKKVLHSFGEGVHHLDNLKGTFAALSELHCDKLHVDPENFRLLGNVLALVVARHF  118
1MBD.pdb               60  DLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRH  119
                            vK HGkkV         h d        Ls lH  Kl vdp nf ll   l   la h 

1HHOA.pdb             114  PAEFTPAVHASLDKFLASVSTVLTSKYR------  141
2DHBA.pdb             114  PNDFTPAVHASLDKFLSSVSTVLTSKYR------  141
1HHOB.pdb             119  GKEFTPPVQAAYQKVVAGVANALAHKYH------  146
2DHBB.pdb             119  GKDFTPELQASYQKVVAGVANALAHKYH------  146
1MBD.pdb              120  PGDFGADAQGAMNKALELFRKDIAAKYKELGYQG  153
                              Ftp   a   K    v   l  KY       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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